PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G093000.1
Common NamePHAVU_001G093000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 255aa    MW: 29178.1 Da    PI: 9.6013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G093000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003497119223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+++++++ +L  H +  H
  Phvul.001G093000.1  97 SCSVCSRVYPTSRLLSIHVSEvH 119
                         6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.286994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003552.196119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003557.9134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMKVEHNQN QQLGFPFWKP LRRRFGPDSP FFAPGNLERE LLAKQVALEL TEEKDQLEKW  60
MQEEEGREIF CPIVGCGARL TSMDDFENHY NARHTASCSV CSRVYPTSRL LSIHVSEVHD  120
SFFQAKVARG YDMYECLVER CGLKFKSYNR RHQHLVDKHK FPTSFEFFKK AKPSKKQRLK  180
SQHKKAVPKE DAAGMMEVEN AAVDDLVSAV SKLSTSDSTP SSISFGRRSK GLSFVPRTVR  240
HRDQSNSAES ETKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954190.0BT095419.1 Soybean clone JCVI-FLGm-14N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161722.10.0hypothetical protein PHAVU_001G093000g
TrEMBLV7CXV70.0V7CXV7_PHAVU; Uncharacterized protein
STRINGGLYMA16G06040.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-104zinc ion binding;nucleic acid binding;zinc ion binding